Selected Papers

• Knodle LA, et al 2011. Coiled-coil domains mediate the association of Salmonella type III effectors with host cell membranes. Cellular Microbiology.13, 1497-1517

• Rivera-Gomez N, et al 2011. The transcriptional machinery in bacteria is modified by the repertoire of Partner Domains associated to Transcription Factors. Microbiology.  157,2308 – 2318

• Armenta-Medina D., et al 2011. Identification of functional motions in the adenylate kinase (ADK) protein family by computational hybrid approaches. PROTEINS: Structure, Function, and Bioinformatics. 79(5): 1662–1671.

• Perez-Rueda & Chandra Janga S. 2010. Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin. Molecular Biology and Evolution. 27,1–11.

• Martinez-Nuñez MA, et al 2010. New insights into the Regulatory Network of Paralogous Genes. Microbiology 156,14-22.

• Hernandez-Montes G, et al 2008. The hidden universal distribution of amino acids biosynthetic networks: a genomic perspective on its origins and evolution. Genome Biology. 9:R95.

• Diaz-Mejia JJ, et al 2007. A network perspective on the evolution of metabolism by gene duplication. Genome Biology. 8:R26.

• Moreno-Campuzano S, et al 2006. Identification and analysis of DNA-binding Transcription Factors in Bacillus subtilis and other Firmicutes- A genomic approach. BMC Genomics 7 147.

• Perez-Rueda  & Collado-Vides. 2001. Common history at the origin of the position-function correlation in transcriptional regulators in Archaea and Bacteria. Journal of  Molecular Evolution. 53,172-179.

• Perez-Rueda & Collado-Vides 2000. The repertoire of DNA-binding transcriptional regulators in Escherichia coli. Nucleic Acids Research. 28,1838-1847.